Characterization of native plant growth promoting rhizobacteria and their anti-oomycete potential against Phytophthora capsici affecting chilli pepper (Capsicum annum L.).
Identifieur interne : 000275 ( Main/Exploration ); précédent : 000274; suivant : 000276Characterization of native plant growth promoting rhizobacteria and their anti-oomycete potential against Phytophthora capsici affecting chilli pepper (Capsicum annum L.).
Auteurs : Sajjad Hyder [Pakistan] ; Amjad Shahzad Gondal [Pakistan] ; Zarrin Fatima Rizvi [Pakistan] ; Raees Ahmad [Pakistan] ; Muhammad Mohsin Alam [Pakistan] ; Abdul Hannan [Pakistan] ; Waqas Ahmed [Pakistan] ; Nida Fatima [Pakistan] ; M. Inam-Ul-Haq [Pakistan]Source :
- Scientific reports [ 2045-2322 ] ; 2020.
Abstract
Phytophthora capsici is a notorious fungus which infects many crop plants at their early and late growth stages. In the present study, twelve P. capsici isolates were morphologically characterized, and based on pathogenicity assays; two highly virulent isolates causing post-emergence damping-off on locally cultivated chilli pepper were screened. Two P. capsici isolates, HydPak1 (MF322868) and HydPk2 (MF322869) were identified based on internal transcribed spacer (ITS) sequence homology. Plant growth promoting rhizobacteria (PGPR) play a significant role in disease suppression and plant growth promotion in various crops. Out of fifteen bacterial strains recovered from chilli rhizosphere, eight were found potential antagonists to P. capsici in vitro. Bacterial strains with strong antifungal potential were subjected to biochemical and molecular analysis. All tested bacterial strains, were positive for hydrogen cyanide (HCN), catalase production and indole-3-acetic acid (IAA) production (ranging from 6.10 to 56.23 µg ml-1), while siderophore production varied between 12.5 and 33.5%. The 16S rRNA sequence analysis of tested bacterial strains showed 98-100% identity with Pseudomonas putida, P. libanensis, P. aeruginosa, Bacillus subtilis, B. megaterium, and B. cereus sequences available in the National Center for Biotechnology Information (NCBI) GenBank nucleotide database. All sequences of identified bacteria were submitted to GenBank for accessions numbers (MH796347-50, MH796355-56, MH801129 and MH801071). Greenhouse studies concluded that all tested bacterial strains significantly suppressed the P. capsici infections (52.3-63%) and enhanced the plant growth characters in chilli pepper. Efficacy of many of these tested rhizobacteria is being first time reported against P. capsici from Pakistan. Plant growth promoting rhizobacteria (PGPR) exhibiting multiple traits may be used in the development of new, eco-friendly, and effective bioformulations as an alternative to synthetic fungicides.
DOI: 10.1038/s41598-020-69410-3
PubMed: 32807801
PubMed Central: PMC7431856
Affiliations:
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G. Khan, Pakistan.</nlm:affiliation><country xml:lang="fr">Pakistan</country><wicri:regionArea>Department of Botany, Ghazi University, D. G. Khan</wicri:regionArea><wicri:noRegion>D. G. Khan</wicri:noRegion></affiliation></author><author><name sortKey="Ahmed, Waqas" sort="Ahmed, Waqas" uniqKey="Ahmed W" first="Waqas" last="Ahmed">Waqas Ahmed</name><affiliation wicri:level="1"><nlm:affiliation>Department of Soil Science and SWC, PMAS Arid Agriculture University, Rawalpindi, Pakistan.</nlm:affiliation><country xml:lang="fr">Pakistan</country><wicri:regionArea>Department of Soil Science and SWC, PMAS Arid Agriculture University, Rawalpindi</wicri:regionArea><wicri:noRegion>Rawalpindi</wicri:noRegion></affiliation></author><author><name sortKey="Fatima, Nida" sort="Fatima, Nida" uniqKey="Fatima N" first="Nida" last="Fatima">Nida Fatima</name><affiliation wicri:level="1"><nlm:affiliation>Department of Soil Science and SWC, PMAS Arid Agriculture University, Rawalpindi, Pakistan.</nlm:affiliation><country xml:lang="fr">Pakistan</country><wicri:regionArea>Department of Soil Science and SWC, PMAS Arid Agriculture University, Rawalpindi</wicri:regionArea><wicri:noRegion>Rawalpindi</wicri:noRegion></affiliation></author><author><name sortKey="Inam Ul Haq, M" sort="Inam Ul Haq, M" uniqKey="Inam Ul Haq M" first="M" last="Inam-Ul-Haq">M. Inam-Ul-Haq</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Pathology, PMAS Arid Agriculture University, Rawalpindi, Pakistan.</nlm:affiliation><country xml:lang="fr">Pakistan</country><wicri:regionArea>Department of Plant Pathology, PMAS Arid Agriculture University, Rawalpindi</wicri:regionArea><wicri:noRegion>Rawalpindi</wicri:noRegion></affiliation></author></analytic><series><title level="j">Scientific reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Phytophthora capsici is a notorious fungus which infects many crop plants at their early and late growth stages. In the present study, twelve P. capsici isolates were morphologically characterized, and based on pathogenicity assays; two highly virulent isolates causing post-emergence damping-off on locally cultivated chilli pepper were screened. Two P. capsici isolates, HydPak1 (MF322868) and HydPk2 (MF322869) were identified based on internal transcribed spacer (ITS) sequence homology. Plant growth promoting rhizobacteria (PGPR) play a significant role in disease suppression and plant growth promotion in various crops. Out of fifteen bacterial strains recovered from chilli rhizosphere, eight were found potential antagonists to P. capsici in vitro. Bacterial strains with strong antifungal potential were subjected to biochemical and molecular analysis. All tested bacterial strains, were positive for hydrogen cyanide (HCN), catalase production and indole-3-acetic acid (IAA) production (ranging from 6.10 to 56.23 µg ml<sup>-1</sup>), while siderophore production varied between 12.5 and 33.5%. The 16S rRNA sequence analysis of tested bacterial strains showed 98-100% identity with Pseudomonas putida, P. libanensis, P. aeruginosa, Bacillus subtilis, B. megaterium, and B. cereus sequences available in the National Center for Biotechnology Information (NCBI) GenBank nucleotide database. All sequences of identified bacteria were submitted to GenBank for accessions numbers (MH796347-50, MH796355-56, MH801129 and MH801071). Greenhouse studies concluded that all tested bacterial strains significantly suppressed the P. capsici infections (52.3-63%) and enhanced the plant growth characters in chilli pepper. Efficacy of many of these tested rhizobacteria is being first time reported against P. capsici from Pakistan. Plant growth promoting rhizobacteria (PGPR) exhibiting multiple traits may be used in the development of new, eco-friendly, and effective bioformulations as an alternative to synthetic fungicides.</div></front></TEI><pubmed><MedlineCitation Status="In-Process" Owner="NLM"><PMID Version="1">32807801</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>27</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2045-2322</ISSN><JournalIssue CitedMedium="Internet"><Volume>10</Volume><Issue>1</Issue><PubDate><Year>2020</Year><Month>08</Month><Day>17</Day></PubDate></JournalIssue><Title>Scientific reports</Title><ISOAbbreviation>Sci Rep</ISOAbbreviation></Journal><ArticleTitle>Characterization of native plant growth promoting rhizobacteria and their anti-oomycete potential against Phytophthora capsici affecting chilli pepper (Capsicum annum L.).</ArticleTitle><Pagination><MedlinePgn>13859</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/s41598-020-69410-3</ELocationID><Abstract><AbstractText>Phytophthora capsici is a notorious fungus which infects many crop plants at their early and late growth stages. In the present study, twelve P. capsici isolates were morphologically characterized, and based on pathogenicity assays; two highly virulent isolates causing post-emergence damping-off on locally cultivated chilli pepper were screened. Two P. capsici isolates, HydPak1 (MF322868) and HydPk2 (MF322869) were identified based on internal transcribed spacer (ITS) sequence homology. Plant growth promoting rhizobacteria (PGPR) play a significant role in disease suppression and plant growth promotion in various crops. Out of fifteen bacterial strains recovered from chilli rhizosphere, eight were found potential antagonists to P. capsici in vitro. Bacterial strains with strong antifungal potential were subjected to biochemical and molecular analysis. All tested bacterial strains, were positive for hydrogen cyanide (HCN), catalase production and indole-3-acetic acid (IAA) production (ranging from 6.10 to 56.23 µg ml<sup>-1</sup>), while siderophore production varied between 12.5 and 33.5%. The 16S rRNA sequence analysis of tested bacterial strains showed 98-100% identity with Pseudomonas putida, P. libanensis, P. aeruginosa, Bacillus subtilis, B. megaterium, and B. cereus sequences available in the National Center for Biotechnology Information (NCBI) GenBank nucleotide database. All sequences of identified bacteria were submitted to GenBank for accessions numbers (MH796347-50, MH796355-56, MH801129 and MH801071). Greenhouse studies concluded that all tested bacterial strains significantly suppressed the P. capsici infections (52.3-63%) and enhanced the plant growth characters in chilli pepper. Efficacy of many of these tested rhizobacteria is being first time reported against P. capsici from Pakistan. Plant growth promoting rhizobacteria (PGPR) exhibiting multiple traits may be used in the development of new, eco-friendly, and effective bioformulations as an alternative to synthetic fungicides.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Hyder</LastName><ForeName>Sajjad</ForeName><Initials>S</Initials><Identifier Source="ORCID">0000-0002-6094-5650</Identifier><AffiliationInfo><Affiliation>Department of Plant Pathology, PMAS Arid Agriculture University, Rawalpindi, Pakistan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gondal</LastName><ForeName>Amjad Shahzad</ForeName><Initials>AS</Initials><Identifier Source="ORCID">0000-0003-3701-0897</Identifier><AffiliationInfo><Affiliation>Department of Plant Pathology, PMAS Arid Agriculture University, Rawalpindi, Pakistan. amjadshahzad@live.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rizvi</LastName><ForeName>Zarrin Fatima</ForeName><Initials>ZF</Initials><AffiliationInfo><Affiliation>Department of Botany, G.C Women University, Sialkot, Pakistan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ahmad</LastName><ForeName>Raees</ForeName><Initials>R</Initials><Identifier Source="ORCID">0000-0002-9673-8610</Identifier><AffiliationInfo><Affiliation>Department of Plant Pathology, PMAS Arid Agriculture University, Rawalpindi, Pakistan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Alam</LastName><ForeName>Muhammad Mohsin</ForeName><Initials>MM</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Bahauddin Zakriya University, Multan, Pakistan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hannan</LastName><ForeName>Abdul</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Botany, Ghazi University, D. G. Khan, Pakistan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ahmed</LastName><ForeName>Waqas</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>Department of Soil Science and SWC, PMAS Arid Agriculture University, Rawalpindi, Pakistan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fatima</LastName><ForeName>Nida</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Department of Soil Science and SWC, PMAS Arid Agriculture University, Rawalpindi, Pakistan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Inam-Ul-Haq</LastName><ForeName>M</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, PMAS Arid Agriculture University, Rawalpindi, Pakistan.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. 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Inam-Ul-Haq</name><name sortKey="Rizvi, Zarrin Fatima" sort="Rizvi, Zarrin Fatima" uniqKey="Rizvi Z" first="Zarrin Fatima" last="Rizvi">Zarrin Fatima Rizvi</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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